PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.U8XKU
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 491aa    MW: 54558 Da    PI: 8.7913
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.U8XKUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05628123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C++C+k F r  nL+ H r H
  Aradu.U8XKU  6 FICEICNKGFQRDQNLQLHRRGH 28
                 89*******************88 PP

2zf-C2H214.97.5e-0584106123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H++t+
  Aradu.U8XKU  84 WKCDKCSKKYAVQSDWKAHLKTC 106
                  58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.66E-8528No hitNo description
Gene3DG3DSA:3.30.160.601.3E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121715.9E-5628IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.022628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.845628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355844979IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-572105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.66E-879104No hitNo description
SMARTSM003558584104IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLRQRATT EEAMKKRVYV CPEKSCVHHN  60
PARALGDLTG IKKHYSRKHG EKKWKCDKCS KKYAVQSDWK AHLKTCGTRE YKCDCGTIFS  120
SGPKYCQLIS LKPCRRDSFI THRAFCDALT EENNRINQQG LTNGVPQNLQ NEQVSDLIAT  180
MPLSNSNASE LNSNNHNNPL RTLSQEIVPV PFKSMSIGGG IFSPTSSSSG TLFGGPKSMH  240
PLPTSSSSLQ LSSNNSTGFN YFQDSSKNLG LVSSSAHMSA TALLQKAAQM GAAASSSSIN  300
SPMMQKPFVT TMAGPDQVSG AATAMQHHNR NNPPSYDHHF NPQADQFFHK RQQEMPLIFE  360
ANNNSNDGST TNNDIGMLST MFMGSDHNTQ EVGATSLVHE RDLAEGNNQM GAPRFGVSND  420
MKTVHDFLGV GGSTSRATGN LHEPQRHHHH QQEQQRLELE ALSQQRLPLI NHFQHHIPHG  480
DSTMEKSVWD I
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016186230.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ64e-91IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLV7D2F30.0V7D2F3_PHAVU; Uncharacterized protein
STRINGGLYMA19G39640.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.15e-75indeterminate(ID)-domain 2